Got restore command to a working state

Extracted some common parts to their own service files

.gitignore

@@ -25,4 +25,5 @@ nbproject
 webpack-stats.json
 .phpunit.result.cache
 .DS_Store
-phpstan.neon
+phpstan.neon
+/composer

scripts/.gitignore

@@ -0,0 +1,2 @@
+*.phar
+vendor/

scripts/Commands/BackupCommand.php

@@ -0,0 +1,176 @@
+<?php
+
+namespace Cli\Commands;
+
+use Cli\Services\AppLocator;
+use Cli\Services\EnvironmentLoader;
+use Cli\Services\MySqlRunner;
+use RecursiveDirectoryIterator;
+use SplFileInfo;
+use Symfony\Component\Console\Command\Command;
+use Symfony\Component\Console\Input\InputArgument;
+use Symfony\Component\Console\Input\InputInterface;
+use Symfony\Component\Console\Input\InputOption;
+use Symfony\Component\Console\Output\OutputInterface;
+use ZipArchive;
+
+final class BackupCommand extends Command
+{
+    protected function configure(): void
+    {
+        $this->setName('backup');
+        $this->setDescription('Backup a BookStack installation to a single compressed ZIP file.');
+        $this->addArgument('backup-path', InputArgument::OPTIONAL, 'Outfile file or directory to store the resulting backup file.', '');
+        $this->addOption('no-database', null, null, "Skip adding a database dump to the backup");
+        $this->addOption('no-uploads', null, null, "Skip adding uploaded files to the backup");
+        $this->addOption('no-themes', null, null, "Skip adding the themes folder to the backup");
+        $this->addOption('app-directory', null, InputOption::VALUE_OPTIONAL, 'BookStack install directory to backup', '');
+    }
+
+    /**
+     * @throws CommandError
+     */
+    protected function execute(InputInterface $input, OutputInterface $output): int
+    {
+        $appDir = AppLocator::require($input->getOption('app-directory'));
+        $output->writeln("<info>Checking system requirements...</info>");
+        $this->ensureRequiredExtensionInstalled();
+
+        $handleDatabase = !$input->getOption('no-database');
+        $handleUploads = !$input->getOption('no-uploads');
+        $handleThemes = !$input->getOption('no-themes');
+        $suggestedOutPath = $input->getArgument('backup-path');
+
+        $zipOutFile = $this->buildZipFilePath($suggestedOutPath, $appDir);
+
+        // Create a new ZIP file
+        $zipTempFile = tempnam(sys_get_temp_dir(), 'bsbackup');
+        $dumpTempFile = '';
+        $zip = new ZipArchive();
+        $zip->open($zipTempFile, ZipArchive::CREATE);
+
+        // Add default files (.env config file and this CLI)
+        $zip->addFile($appDir . DIRECTORY_SEPARATOR . '.env', '.env');
+        $zip->addFile($appDir . DIRECTORY_SEPARATOR . 'scripts' . DIRECTORY_SEPARATOR . 'run', 'run');
+
+        if ($handleDatabase) {
+            $output->writeln("<info>Dumping the database via mysqldump...</info>");
+            $dumpTempFile = $this->createDatabaseDump($appDir);
+            $output->writeln("<info>Adding database dump to backup archive...</info>");
+            $zip->addFile($dumpTempFile, 'db.sql');
+        }
+
+        if ($handleUploads) {
+            $output->writeln("<info>Adding BookStack upload folders to backup archive...</info>");
+            $this->addUploadFoldersToZip($zip, $appDir);
+        }
+
+        if ($handleThemes) {
+            $output->writeln("<info>Adding BookStack theme folders to backup archive...</info>");
+            $this->addFolderToZipRecursive($zip, implode(DIRECTORY_SEPARATOR, [$appDir, 'themes']), 'themes');
+        }
+
+        // Close off our zip and move it to the required location
+        $zip->close();
+        // Delete our temporary DB dump file if exists. Must be done after zip close.
+        if ($dumpTempFile) {
+            unlink($dumpTempFile);
+        }
+        // Move the zip into the target location
+        rename($zipTempFile, $zipOutFile);
+
+        // Announce end
+        $output->writeln("<info>Backup finished.</info>");
+        $output->writeln("Output ZIP saved to: {$zipOutFile}");
+
+        return Command::SUCCESS;
+    }
+
+    /**
+     * Ensure the required PHP extensions are installed for this command.
+     * @throws CommandError
+     */
+    protected function ensureRequiredExtensionInstalled(): void
+    {
+        if (!extension_loaded('zip')) {
+            throw new CommandError('The "zip" PHP extension is required to run this command');
+        }
+    }
+
+    /**
+     * Build a full zip path from the given suggestion, which may be empty,
+     * a path to a folder, or a path to a file in relative or absolute form.
+     * @throws CommandError
+     */
+    protected function buildZipFilePath(string $suggestedOutPath, string $appDir): string
+    {
+        $zipDir = getcwd() ?: $appDir;
+        $zipName = "bookstack-backup-" . date('Y-m-d-His') . '.zip';
+
+        if ($suggestedOutPath) {
+            if (is_dir($suggestedOutPath)) {
+                $zipDir = realpath($suggestedOutPath);
+            } else if (is_dir(dirname($suggestedOutPath))) {
+                $zipDir = realpath(dirname($suggestedOutPath));
+                $zipName = basename($suggestedOutPath);
+            } else {
+                throw new CommandError("Could not resolve provided [{$suggestedOutPath}] path to an existing folder.");
+            }
+        }
+
+        $fullPath = $zipDir . DIRECTORY_SEPARATOR . $zipName;
+
+        if (file_exists($fullPath)) {
+            throw new CommandError("Target ZIP output location at [{$fullPath}] already exists.");
+        }
+
+        return $fullPath;
+    }
+
+    /**
+     * Add app-relative upload folders to the provided zip archive.
+     * Will recursively go through all directories to add all files.
+     */
+    protected function addUploadFoldersToZip(ZipArchive $zip, string $appDir): void
+    {
+        $this->addFolderToZipRecursive($zip, implode(DIRECTORY_SEPARATOR, [$appDir, 'public', 'uploads']), 'public/uploads');
+        $this->addFolderToZipRecursive($zip, implode(DIRECTORY_SEPARATOR, [$appDir, 'storage', 'uploads']), 'storage/uploads');
+    }
+
+    /**
+     * Recursively add all contents of the given dirPath to the provided zip file
+     * with a zip location of the targetZipPath.
+     */
+    protected function addFolderToZipRecursive(ZipArchive $zip, string $dirPath, string $targetZipPath): void
+    {
+        $dirIter = new RecursiveDirectoryIterator($dirPath);
+        $fileIter = new \RecursiveIteratorIterator($dirIter);
+        /** @var SplFileInfo $file */
+        foreach ($fileIter as $file) {
+            if (!$file->isDir()) {
+                $zip->addFile($file->getPathname(), $targetZipPath . '/' . $fileIter->getSubPathname());
+            }
+        }
+    }
+
+    /**
+     * Create a database dump and return the path to the dumped SQL output.
+     * @throws CommandError
+     */
+    protected function createDatabaseDump(string $appDir): string
+    {
+        $envOptions = EnvironmentLoader::loadMergedWithCurrentEnv($appDir);
+        $mysql = MySqlRunner::fromEnvOptions($envOptions);
+        $mysql->ensureOptionsSet();
+
+        $dumpTempFile = tempnam(sys_get_temp_dir(), 'bsdbdump');
+        try {
+            $mysql->runDumpToFile($dumpTempFile);
+        } catch (\Exception $exception) {
+            unlink($dumpTempFile);
+            throw new CommandError($exception->getMessage());
+        }
+
+        return $dumpTempFile;
+    }
+}

scripts/Commands/CommandError.php

@@ -0,0 +1,5 @@
+<?php
+
+namespace Cli\Commands;
+
+class CommandError extends \Exception {}

scripts/Commands/InitCommand.php

@@ -0,0 +1,173 @@
+<?php
+
+namespace Cli\Commands;
+
+use Cli\Services\ComposerLocator;
+use Cli\Services\EnvironmentLoader;
+use Cli\Services\ProgramRunner;
+use Cli\Services\RequirementsValidator;
+use Symfony\Component\Console\Command\Command;
+use Symfony\Component\Console\Input\InputArgument;
+use Symfony\Component\Console\Input\InputInterface;
+use Symfony\Component\Console\Output\OutputInterface;
+
+class InitCommand extends Command
+{
+    protected function configure(): void
+    {
+        $this->setName('init');
+        $this->setDescription('Initialise a new BookStack install. Does not configure the webserver or database.');
+        $this->addArgument('target-directory', InputArgument::OPTIONAL, 'The directory to create the BookStack install within. Must be empty.', '');
+    }
+
+    /**
+     * @throws CommandError
+     */
+    protected function execute(InputInterface $input, OutputInterface $output): int
+    {
+        $output->writeln("<info>Checking system requirements...</info>");
+        RequirementsValidator::validate();
+
+        $suggestedOutPath = $input->getArgument('target-directory');
+
+        $output->writeln("<info>Locating and checking install directory...</info>");
+        $installDir = $this->getInstallDir($suggestedOutPath);
+        $this->ensureInstallDirEmptyAndWritable($installDir);
+
+        $output->writeln("<info>Cloning down BookStack project to install directory...</info>");
+        $this->cloneBookStackViaGit($installDir);
+
+        $output->writeln("<info>Checking composer exists...</info>");
+        $composerLocator = new ComposerLocator($installDir);
+        $composer = $composerLocator->getProgram();
+        if (!$composer->isFound()) {
+            $output->writeln("<info>Composer does not exist, downloading a local copy...</info>");
+            $composerLocator->download();
+        }
+
+        $output->writeln("<info>Installing application dependencies using composer...</info>");
+        $this->installComposerDependencies($composer, $installDir);
+
+        $output->writeln("<info>Creating .env file from .env.example...</info>");
+        copy($installDir . DIRECTORY_SEPARATOR . '.env.example', $installDir . DIRECTORY_SEPARATOR . '.env');
+        sleep(1);
+
+        $output->writeln("<info>Generating app key...</info>");
+        $this->generateAppKey($installDir);
+
+        // Announce end
+        $output->writeln("<info>A BookStack install has been initialized at: {$installDir}\n</info>");
+        $output->writeln("<info>You will still need to:</info>");
+        $output->writeln("<info>- Update the .env file in the install with correct URL, database and email details.</info>");
+        $output->writeln("<info>- Run 'php artisan migrate' to set-up the database.</info>");
+        $output->writeln("<info>- Configure your webserver for use with BookStack.</info>");
+        $output->writeln("<info>- Ensure the required directories (storage/ bootstrap/cache public/uploads) are web-server writable.</info>");
+
+        return Command::SUCCESS;
+    }
+
+    protected function generateAppKey(string $installDir): void
+    {
+        $errors = (new ProgramRunner('php', '/usr/bin/php'))
+            ->withTimeout(60)
+            ->withIdleTimeout(5)
+            ->withEnvironment(EnvironmentLoader::load($installDir))
+            ->runCapturingAllOutput([
+                $installDir . DIRECTORY_SEPARATOR . 'artisan',
+                'key:generate', '--force', '-n', '-q'
+            ]);
+
+        if ($errors) {
+            throw new CommandError("Failed 'php artisan key:generate' with errors:\n" . $errors);
+        }
+    }
+
+    /**
+     * Run composer install to download PHP dependencies.
+     * @throws CommandError
+     */
+    protected function installComposerDependencies(ProgramRunner $composer, string $installDir): void
+    {
+        $errors = $composer->runCapturingStdErr([
+                'install',
+                '--no-dev', '-n', '-q', '--no-progress',
+                '-d', $installDir
+            ]);
+
+        if ($errors) {
+            throw new CommandError("Failed composer install with errors:\n" . $errors);
+        }
+    }
+
+    /**
+     * Clone a new instance of BookStack to the given install folder.
+     * @throws CommandError
+     */
+    protected function cloneBookStackViaGit(string $installDir): void
+    {
+        $git = (new ProgramRunner('git', '/usr/bin/git'))
+            ->withTimeout(240)
+            ->withIdleTimeout(15);
+
+        $errors = $git->runCapturingStdErr([
+                'clone', '-q',
+                '--branch', 'release',
+                '--single-branch',
+                'https://github.com/BookStackApp/BookStack.git',
+                $installDir
+            ]);
+
+        if ($errors) {
+            throw new CommandError("Failed git clone with errors:\n" . $errors);
+        }
+
+        // Disable file permission tracking for git repo
+        $git->runCapturingStdErr([
+            '-C', $installDir,
+            'config', 'core.fileMode', 'false'
+        ]);
+    }
+
+    /**
+     * Ensure that the installation directory is completely empty to avoid potential conflicts or issues.
+     * @throws CommandError
+     */
+    protected function ensureInstallDirEmptyAndWritable(string $installDir): void
+    {
+        $contents = array_diff(scandir($installDir), ['..', '.']);
+        if (count($contents) > 0) {
+            throw new CommandError("Expected install directory to be empty but existing files found in [{$installDir}] target location.");
+        }
+
+        if (!is_writable($installDir)) {
+            throw new CommandError("Target install directory [{$installDir}] is not writable.");
+        }
+    }
+
+    /**
+     * Build a full path to the intended location for the BookStack install.
+     * @throws CommandError
+     */
+    protected function getInstallDir(string $suggestedDir): string
+    {
+        $dir = getcwd();
+
+        if ($suggestedDir) {
+            if (is_file($suggestedDir)) {
+                throw new CommandError("Was provided [{$suggestedDir}] as an install path but existing file provided.");
+            } else if (is_dir($suggestedDir)) {
+                $dir = realpath($suggestedDir);
+            } else if (is_dir(dirname($suggestedDir))) {
+                $created = mkdir($suggestedDir);
+                if (!$created) {
+                    throw new CommandError("Could not create directory [{$suggestedDir}] for install.");
+                }
+                $dir = realpath($suggestedDir);
+            } else {
+                throw new CommandError("Could not resolve provided [{$suggestedDir}] path to an existing folder.");
+            }
+        }
+
+        return $dir;
+    }
+}

scripts/Commands/RestoreCommand.php

@@ -0,0 +1,204 @@
+<?php
+
+namespace Cli\Commands;
+
+use Cli\Services\AppLocator;
+use Cli\Services\ArtisanRunner;
+use Cli\Services\BackupZip;
+use Cli\Services\EnvironmentLoader;
+use Cli\Services\InteractiveConsole;
+use Cli\Services\MySqlRunner;
+use Cli\Services\ProgramRunner;
+use Cli\Services\RequirementsValidator;
+use RecursiveDirectoryIterator;
+use RecursiveIteratorIterator;
+use Symfony\Component\Console\Command\Command;
+use Symfony\Component\Console\Input\InputArgument;
+use Symfony\Component\Console\Input\InputInterface;
+use Symfony\Component\Console\Input\InputOption;
+use Symfony\Component\Console\Output\OutputInterface;
+
+class RestoreCommand extends Command
+{
+    protected function configure(): void
+    {
+        $this->setName('restore');
+        $this->addArgument('backup-zip', InputArgument::REQUIRED, 'Path to the ZIP file containing your backup.');
+        $this->setDescription('Restore data and files from a backup ZIP file.');
+        $this->addOption('app-directory', null, InputOption::VALUE_OPTIONAL, 'BookStack install directory to restore into', '');
+    }
+
+    /**
+     * @throws CommandError
+     */
+    protected function execute(InputInterface $input, OutputInterface $output): int
+    {
+        $interactions = new InteractiveConsole($this->getHelper('question'), $input, $output);
+
+        $output->writeln("<info>Warning!</info>");
+        $output->writeln("<info>- A restore operation will overwrite and remove files & content from an existing instance.</info>");
+        $output->writeln("<info>- Any existing tables within the configured database will be dropped.</info>");
+        $output->writeln("<info>- You should only restore into an instance of the same or newer BookStack version.</info>");
+        $output->writeln("<info>- This command won't handle, restore or address any server configuration.</info>");
+
+        $appDir = AppLocator::require($input->getOption('app-directory'));
+        $output->writeln("<info>Checking system requirements...</info>");
+        RequirementsValidator::validate();
+        (new ProgramRunner('mysql', '/usr/bin/mysql'))->ensureFound();
+
+        $zipPath = realpath($input->getArgument('backup-zip'));
+        $zip = new BackupZip($zipPath);
+        $contents = $zip->getContentsOverview();
+
+        $output->writeln("\n<info>Contents found in the backup ZIP:</info>");
+        $hasContent = false;
+        foreach ($contents as $info) {
+            $output->writeln(($info['exists'] ? '✔ ' : '❌ ') . $info['desc']);
+            if ($info['exists']) {
+                $hasContent = true;
+            }
+        }
+
+        if (!$hasContent) {
+            throw new CommandError("Provided ZIP backup [{$zipPath}] does not have any expected restore-able content.");
+        }
+
+        $output->writeln("<info>The checked elements will be restored into [{$appDir}].</info>");
+        $output->writeln("<info>Existing content may be overwritten.</info>");
+
+        if (!$interactions->confirm("Do you want to continue?")) {
+            $output->writeln("<info>Stopping restore operation.</info>");
+            return Command::SUCCESS;
+        }
+
+        $output->writeln("<info>Extracting ZIP into temporary directory...</info>");
+        $extractDir = $appDir . DIRECTORY_SEPARATOR . 'restore-temp-' . time();
+        if (!mkdir($extractDir)) {
+            throw new CommandError("Could not create temporary extraction directory at [{$extractDir}].");
+        }
+        $zip->extractInto($extractDir);
+
+        $envChanges = [];
+        if ($contents['env']['exists']) {
+            $output->writeln("<info>Restoring and merging .env file...</info>");
+            $envChanges = $this->restoreEnv($extractDir, $appDir, $output, $interactions);
+        }
+
+        $folderLocations = ['themes', 'public/uploads', 'storage/uploads'];
+        foreach ($folderLocations as $folderSubPath) {
+            if ($contents[$folderSubPath]['exists']) {
+                $output->writeln("<info>Restoring {$folderSubPath} folder...</info>");
+                $this->restoreFolder($folderSubPath, $appDir, $extractDir);
+            }
+        }
+
+        $artisan = (new ArtisanRunner($appDir));
+        if ($contents['db']['exists']) {
+            $output->writeln("<info>Restoring database from SQL dump...</info>");
+            $this->restoreDatabase($appDir, $extractDir);
+
+            $output->writeln("<info>Running database migrations...</info>");
+            $artisan->run(['migrate', '--force']);
+        }
+
+        if ($envChanges && $envChanges['old_url'] !== $envChanges['new_url']) {
+            $output->writeln("<info>App URL change made, Updating database with URL change...</info>");
+            $artisan->run([
+                'bookstack:update-url',
+                $envChanges['old_url'], $envChanges['new_url'],
+            ]);
+        }
+
+        $output->writeln("<info>Clearing app caches...</info>");
+        $artisan->run(['cache:clear']);
+        $artisan->run(['config:clear']);
+        $artisan->run(['view:clear']);
+
+        $output->writeln("<info>Cleaning up extract directory...</info>");
+        $this->deleteDirectoryAndContents($extractDir);
+
+        $output->writeln("<info>\nRestore operation complete!</info>");
+
+        return Command::SUCCESS;
+    }
+
+    protected function restoreEnv(string $extractDir, string $appDir, OutputInterface $output, InteractiveConsole $interactions): array
+    {
+        $oldEnv = EnvironmentLoader::load($extractDir);
+        $currentEnv = EnvironmentLoader::load($appDir);
+        $envContents = file_get_contents($extractDir . DIRECTORY_SEPARATOR . '.env');
+        $appEnvPath = $appDir . DIRECTORY_SEPARATOR . '.env';
+
+        $mysqlCurrent = MySqlRunner::fromEnvOptions($currentEnv);
+        $mysqlOld = MySqlRunner::fromEnvOptions($oldEnv);
+        if (!$mysqlOld->testConnection()) {
+            $currentWorking = $mysqlCurrent->testConnection();
+            if (!$currentWorking) {
+                throw new CommandError("Could not find a working database configuration");
+            }
+
+            // Copy across new env details to old env
+            $currentEnvContents = file_get_contents($appEnvPath);
+            $currentEnvDbLines = array_values(array_filter(explode("\n", $currentEnvContents), function (string $line) {
+                return str_starts_with($line, 'DB_');
+            }));
+            $oldEnvLines = array_values(array_filter(explode("\n", $currentEnvContents), function (string $line) {
+                return !str_starts_with($line, 'DB_');
+            }));
+            $envContents = implode("\n", [
+                '# Database credentials merged from existing .env file',
+                ...$currentEnvDbLines,
+                ...$oldEnvLines
+            ]);
+            copy($appEnvPath, $appEnvPath . '.backup');
+        }
+
+        $oldUrl = $oldEnv['APP_URL'] ?? '';
+        $newUrl = $currentEnv['APP_URL'] ?? '';
+        $returnData = [
+            'old_url' => $oldUrl,
+            'new_url' => $oldUrl,
+        ];
+
+        if ($oldUrl !== $newUrl) {
+            $output->writeln("Found different APP_URL values:");
+            $changedUrl = $interactions->choice('Which would you like to use?', array_filter([$oldUrl, $newUrl]));
+            $envContents = preg_replace('/^APP_URL=.*?$/', 'APP_URL="' . $changedUrl . '"', $envContents);
+            $returnData['new_url'] = $changedUrl;
+        }
+
+        file_put_contents($appDir . DIRECTORY_SEPARATOR . '.env', $envContents);
+
+        return $returnData;
+    }
+
+    protected function restoreFolder(string $folderSubPath, string $appDir, string $extractDir): void
+    {
+        $fullAppFolderPath = $appDir . DIRECTORY_SEPARATOR . $folderSubPath;
+        $this->deleteDirectoryAndContents($fullAppFolderPath);
+        rename($extractDir . DIRECTORY_SEPARATOR . $folderSubPath, $fullAppFolderPath);
+    }
+
+    protected function deleteDirectoryAndContents(string $dir)
+    {
+        $files = new RecursiveIteratorIterator(
+            new RecursiveDirectoryIterator($dir, RecursiveDirectoryIterator::SKIP_DOTS),
+            RecursiveIteratorIterator::CHILD_FIRST
+        );
+
+        foreach ($files as $fileinfo) {
+            $path = $fileinfo->getRealPath();
+            $fileinfo->isDir() ? rmdir($path) : unlink($path);
+        }
+
+        rmdir($dir);
+    }
+
+    protected function restoreDatabase(string $appDir, string $extractDir): void
+    {
+        $dbDump = $extractDir . DIRECTORY_SEPARATOR . 'db.sql';
+        $currentEnv = EnvironmentLoader::load($appDir);
+        $mysql = MySqlRunner::fromEnvOptions($currentEnv);
+        $mysql->importSqlFile($dbDump);
+    }
+}

scripts/Commands/UpdateCommand.php

@@ -0,0 +1,92 @@
+<?php
+
+namespace Cli\Commands;
+
+use Cli\Services\AppLocator;
+use Cli\Services\ArtisanRunner;
+use Cli\Services\ComposerLocator;
+use Cli\Services\ProgramRunner;
+use Cli\Services\RequirementsValidator;
+use Symfony\Component\Console\Command\Command;
+use Symfony\Component\Console\Input\InputInterface;
+use Symfony\Component\Console\Input\InputOption;
+use Symfony\Component\Console\Output\OutputInterface;
+
+class UpdateCommand extends Command
+{
+    protected function configure(): void
+    {
+        $this->setName('update');
+        $this->setDescription('Update an existing BookStack instance.');
+        $this->addOption('app-directory', null, InputOption::VALUE_OPTIONAL, 'BookStack install directory to update', '');
+    }
+
+    /**
+     * @throws CommandError
+     */
+    protected function execute(InputInterface $input, OutputInterface $output): int
+    {
+        $appDir = AppLocator::require($input->getOption('app-directory'));
+        $output->writeln("<info>Checking system requirements...</info>");
+        RequirementsValidator::validate();
+
+        $output->writeln("<info>Checking composer exists...</info>");
+        $composerLocator = new ComposerLocator($appDir);
+        $composer = $composerLocator->getProgram();
+        if (!$composer->isFound()) {
+            $output->writeln("<info>Composer does not exist, downloading a local copy...</info>");
+            $composerLocator->download();
+        }
+
+        $output->writeln("<info>Fetching latest code via Git...</info>");
+        $this->updateCodeUsingGit($appDir);
+
+        $output->writeln("<info>Installing PHP dependencies via composer...</info>");
+        $this->installComposerDependencies($composer, $appDir);
+
+        $output->writeln("<info>Running database migrations...</info>");
+        $artisan = (new ArtisanRunner($appDir));
+        $artisan->run(['migrate', '--force']);
+
+        $output->writeln("<info>Clearing app caches...</info>");
+        $artisan->run(['cache:clear']);
+        $artisan->run(['config:clear']);
+        $artisan->run(['view:clear']);
+
+        return Command::SUCCESS;
+    }
+
+    /**
+     * @throws CommandError
+     */
+    protected function updateCodeUsingGit(string $appDir): void
+    {
+        $errors = (new ProgramRunner('git', '/usr/bin/git'))
+            ->withTimeout(240)
+            ->withIdleTimeout(15)
+            ->runCapturingStdErr([
+                '-C', $appDir,
+                'pull', '-q', 'origin', 'release',
+            ]);
+
+        if ($errors) {
+            throw new CommandError("Failed git pull with errors:\n" . $errors);
+        }
+    }
+
+    /**
+     * @throws CommandError
+     */
+    protected function installComposerDependencies(ProgramRunner $composer, string $appDir): void
+    {
+        $errors = $composer->runCapturingStdErr([
+            'install',
+            '--no-dev', '-n', '-q', '--no-progress',
+            '-d', $appDir,
+        ]);
+
+        if ($errors) {
+            throw new CommandError("Failed composer install with errors:\n" . $errors);
+        }
+    }
+}

scripts/Services/AppLocator.php

@@ -0,0 +1,51 @@
+<?php
+
+namespace Cli\Services;
+
+use Phar;
+
+class AppLocator
+{
+    public static function search(string $directory = ''): string
+    {
+        $directoriesToSearch = $directory ? [$directory] : [
+            getcwd(),
+            static::getCliDirectory(),
+        ];
+
+        foreach ($directoriesToSearch as $directory) {
+            if ($directory && static::isProbablyAppDirectory($directory)) {
+                return $directory;
+            }
+        }
+
+        return '';
+    }
+
+    public static function require(string $directory = ''): string
+    {
+        $dir = static::search($directory);
+
+        if (!$dir) {
+            throw new \Exception('Could not find a valid BookStack installation');
+        }
+
+        return $dir;
+    }
+
+    protected static function getCliDirectory(): string
+    {
+        $scriptDir = dirname(__DIR__);
+        if (str_starts_with($scriptDir, 'phar://')) {
+            $scriptDir = dirname(Phar::running(false));
+        }
+
+        return dirname($scriptDir);
+    }
+
+    protected static function isProbablyAppDirectory(string $directory): bool
+    {
+        return file_exists($directory . DIRECTORY_SEPARATOR . 'version')
+            && file_exists($directory . DIRECTORY_SEPARATOR . 'package.json');
+    }
+}

scripts/Services/ArtisanRunner.php

@@ -0,0 +1,31 @@
+<?php
+
+namespace Cli\Services;
+
+use Exception;
+
+class ArtisanRunner
+{
+    public function __construct(
+        protected string $appDir
+    ) {
+    }
+
+    public function run(array $commandArgs)
+    {
+        $errors = (new ProgramRunner('php', '/usr/bin/php'))
+            ->withTimeout(60)
+            ->withIdleTimeout(5)
+            ->withEnvironment(EnvironmentLoader::load($this->appDir))
+            ->runCapturingAllOutput([
+                $this->appDir . DIRECTORY_SEPARATOR . 'artisan',
+                '-n', '-q',
+                ...$commandArgs
+            ]);
+
+        if ($errors) {
+            $cmdString = implode(' ', $commandArgs);
+            throw new Exception("Failed 'php artisan {$cmdString}' with errors:\n" . $errors);
+        }
+    }
+}

scripts/Services/BackupZip.php

@@ -0,0 +1,68 @@
+<?php
+
+namespace Cli\Services;
+
+use ZipArchive;
+
+class BackupZip
+{
+    protected ZipArchive $zip;
+    public function __construct(
+        protected string $filePath
+    ) {
+        $this->zip = new ZipArchive();
+        $status = $this->zip->open($this->filePath);
+
+        if (!file_exists($this->filePath) || $status !== true) {
+            throw new \Exception("Could not open file [{$this->filePath}] as ZIP");
+        }
+    }
+
+    /**
+     * @return array<string, array{desc: string, exists: bool}>
+     */
+    public function getContentsOverview(): array
+    {
+        return [
+            'env' => [
+                'desc' => '.env Config File',
+                'exists' => boolval($this->zip->statName('.env')),
+            ],
+            'themes' => [
+                'desc' => 'Themes Folder',
+                'exists' => $this->hasFolder('themes/'),
+            ],
+            'public/uploads' => [
+                'desc' => 'Public File Uploads',
+                'exists' => $this->hasFolder('public/uploads/'),
+            ],
+            'storage/uploads' => [
+                'desc' => 'Private File Uploads',
+                'exists' => $this->hasFolder('storage/uploads/'),
+            ],
+            'db' => [
+                'desc' => 'Database Dump',
+                'exists' => boolval($this->zip->statName('db.sql')),
+            ],
+        ];
+    }
+
+    public function extractInto(string $directoryPath): void
+    {
+        $result = $this->zip->extractTo($directoryPath);
+        if (!$result) {
+            throw new \Exception("Failed extraction of ZIP into [{$directoryPath}].");
+        }
+    }
+
+    protected function hasFolder($folderPath): bool
+    {
+        for ($i = 0; $i < $this->zip->numFiles; $i++) {
+            $filePath = $this->zip->getNameIndex($i);
+            if (str_starts_with($filePath, $folderPath)) {
+                return true;
+            }
+        }
+        return false;
+    }
+}

scripts/Services/ComposerLocator.php

@@ -0,0 +1,50 @@
+<?php
+
+namespace Cli\Services;
+
+use Exception;
+
+class ComposerLocator
+{
+    public function __construct(
+        protected string $appDir
+    ) {
+    }
+
+    public function getProgram(): ProgramRunner
+    {
+        return (new ProgramRunner('composer', '/usr/local/bin/composer'))
+            ->withTimeout(300)
+            ->withIdleTimeout(15)
+            ->withAdditionalPathLocation($this->appDir);
+    }
+
+    /**
+     * @throws Exception
+     */
+    public function download(): void
+    {
+        $setupPath = $this->appDir . DIRECTORY_SEPARATOR . 'composer-setup.php';
+        $signature = file_get_contents('https://composer.github.io/installer.sig');
+        copy('https://getcomposer.org/installer', $setupPath);
+        $checksum = hash_file('sha384', $setupPath);
+
+        if ($signature !== $checksum) {
+            unlink($setupPath);
+            throw new Exception("Could not install composer, checksum validation failed.");
+        }
+
+        $status = (new ProgramRunner('php', '/usr/bin/php'))
+            ->runWithoutOutputCallbacks([
+                $setupPath, '--quiet',
+                "--install-dir={$this->appDir}",
+                "--filename=composer",
+            ]);
+
+        unlink($setupPath);
+
+        if ($status !== 0) {
+            throw new Exception("Could not install composer, composer-setup script run failed.");
+        }
+    }
+}

scripts/Services/EnvironmentLoader.php

@@ -0,0 +1,23 @@
+<?php
+
+namespace Cli\Services;
+
+use Dotenv\Dotenv;
+
+class EnvironmentLoader
+{
+    public static function load(string $rootPath): array
+    {
+        $dotenv = Dotenv::createArrayBacked($rootPath);
+        return $dotenv->safeLoad();
+    }
+
+    public static function loadMergedWithCurrentEnv(string $rootPath): array
+    {
+        $env = static::load($rootPath);
+        foreach ($_SERVER as $key => $val) {
+            $env[$key] = $val;
+        }
+        return $env;
+    }
+}

scripts/Services/InteractiveConsole.php

@@ -0,0 +1,31 @@
+<?php
+
+namespace Cli\Services;
+
+use Symfony\Component\Console\Question\ChoiceQuestion;
+use Symfony\Component\Console\Helper\QuestionHelper;
+use Symfony\Component\Console\Input\InputInterface;
+use Symfony\Component\Console\Output\OutputInterface;
+use Symfony\Component\Console\Question\ConfirmationQuestion;
+
+class InteractiveConsole
+{
+    public function __construct(
+        protected QuestionHelper $helper,
+        protected InputInterface $input,
+        protected OutputInterface $output,
+    ) {
+    }
+
+    public function confirm(string $text): bool
+    {
+        $question = new ConfirmationQuestion($text . " (y/n)\n", false);
+        return $this->helper->ask($this->input, $this->output, $question);
+    }
+
+    public function choice(string $question, array $answers)
+    {
+        $question = new ChoiceQuestion($question, $answers, $answers[0]);
+        return $this->helper->ask($this->input, $this->output, $question);
+    }
+}

scripts/Services/MySqlRunner.php

@@ -0,0 +1,120 @@
+<?php
+
+namespace Cli\Services;
+
+use Exception;
+
+class MySqlRunner
+{
+    public function __construct(
+        protected string $host,
+        protected string $user,
+        protected string $password,
+        protected string $database,
+        protected int $port = 3306
+    ) {
+    }
+
+    /**
+     * @throws Exception
+     */
+    public function ensureOptionsSet(): void
+    {
+        $options = ['host', 'user', 'password', 'database'];
+        foreach ($options as $option) {
+            if (!$this->$option) {
+                throw new Exception("Could not find a valid value for the \"{$option}\" database option.");
+            }
+        }
+    }
+
+    public function testConnection(): bool
+    {
+        $output = (new ProgramRunner('mysql', '/usr/bin/mysql'))
+            ->withTimeout(240)
+            ->withIdleTimeout(5)
+            ->runCapturingStdErr([
+                '-h', $this->host,
+                '-P', $this->port,
+                '-u', $this->user,
+                '-p' . $this->password,
+                $this->database,
+                '-e', "show tables;"
+            ]);
+
+        return !$output;
+    }
+
+    public function importSqlFile(string $sqlFilePath): void
+    {
+        $output = (new ProgramRunner('mysql', '/usr/bin/mysql'))
+            ->withTimeout(240)
+            ->withIdleTimeout(5)
+            ->runCapturingStdErr([
+                '-h', $this->host,
+                '-P', $this->port,
+                '-u', $this->user,
+                '-p' . $this->password,
+                $this->database,
+                '<', $sqlFilePath
+            ]);
+
+        if ($output) {
+            throw new Exception("Failed mysql file import with errors:\n" . $output);
+        }
+    }
+
+    public function runDumpToFile(string $filePath): void
+    {
+        $file = fopen($filePath, 'w');
+        $errors = "";
+        $hasOutput = false;
+
+        try {
+            (new ProgramRunner('mysqldump', '/usr/bin/mysqldump'))
+                ->withTimeout(240)
+                ->withIdleTimeout(15)
+                ->runWithoutOutputCallbacks([
+                    '-h', $this->host,
+                    '-P', $this->port,
+                    '-u', $this->user,
+                    '-p' . $this->password,
+                    '--single-transaction',
+                    '--no-tablespaces',
+                    $this->database,
+                ], function ($data) use (&$file, &$hasOutput) {
+                    fwrite($file, $data);
+                    $hasOutput = true;
+                }, function ($error) use (&$errors) {
+                    $errors .= $error . "\n";
+                });
+        } catch (\Exception $exception) {
+            fclose($file);
+            if ($exception instanceof ProcessTimedOutException) {
+                if (!$hasOutput) {
+                    throw new Exception("mysqldump operation timed-out.\nNo data has been received so the connection to your database may have failed.");
+                } else {
+                    throw new Exception("mysqldump operation timed-out after data was received.");
+                }
+            }
+            throw new Exception($exception->getMessage());
+        }
+
+        fclose($file);
+
+        if ($errors) {
+            throw new Exception("Failed mysqldump with errors:\n" . $errors);
+        }
+    }
+
+    public static function fromEnvOptions(array $env): static
+    {
+        $host = ($env['DB_HOST'] ?? '');
+        $username = ($env['DB_USERNAME'] ?? '');
+        $password = ($env['DB_PASSWORD'] ?? '');
+        $database = ($env['DB_DATABASE'] ?? '');
+        $port = intval($env['DB_PORT'] ?? 3306);
+
+        return new static($host, $username, $password, $database, $port);
+    }
+}

scripts/Services/ProgramRunner.php

@@ -0,0 +1,122 @@
+<?php
+
+namespace Cli\Services;
+
+use Symfony\Component\Process\ExecutableFinder;
+use Symfony\Component\Process\Process;
+
+class ProgramRunner
+{
+    protected int $timeout = 240;
+    protected int $idleTimeout = 15;
+    protected array $environment = [];
+    protected array $additionalProgramDirectories = [];
+
+    public function __construct(
+        protected string $program,
+        protected string $defaultPath
+    ) {
+    }
+
+    public function withTimeout(int $timeoutSeconds): static
+    {
+        $this->timeout = $timeoutSeconds;
+        return $this;
+    }
+
+    public function withIdleTimeout(int $idleTimeoutSeconds): static
+    {
+        $this->idleTimeout = $idleTimeoutSeconds;
+        return $this;
+    }
+
+    public function withEnvironment(array $environment): static
+    {
+        $this->environment = $environment;
+        return $this;
+    }
+
+    public function withAdditionalPathLocation(string $directoryPath): static
+    {
+        $this->additionalProgramDirectories[] = $directoryPath;
+        return $this;
+    }
+
+    public function runCapturingAllOutput(array $args): string
+    {
+        $output = '';
+        $callable = function ($data) use (&$output) {
+            $output .= $data;
+        };
+
+        $this->runWithoutOutputCallbacks($args, $callable, $callable);
+        return $output;
+    }
+
+    public function runCapturingStdErr(array $args): string
+    {
+        $err = '';
+        $this->runWithoutOutputCallbacks($args, fn() => '', function ($data) use (&$err) {
+            $err .= $data;
+        });
+        return $err;
+    }
+
+    public function runWithoutOutputCallbacks(array $args, callable $stdOutCallback = null, callable $stdErrCallback = null): int
+    {
+        $process = $this->startProcess($args);
+        foreach ($process as $type => $data) {
+            if ($type === $process::ERR) {
+                if ($stdErrCallback) {
+                    $stdErrCallback($data);
+                }
+            } else {
+                if ($stdOutCallback) {
+                    $stdOutCallback($data);
+                }
+            }
+        }
+
+        return $process->getExitCode() ?? 1;
+    }
+
+    /**
+     * @throws \Exception
+     */
+    public function ensureFound(): void
+    {
+        $this->resolveProgramPath();
+    }
+
+    public function isFound(): bool
+    {
+        try {
+            $this->ensureFound();
+            return true;
+        } catch (\Exception $exception) {
+            return false;
+        }
+    }
+
+    protected function startProcess(array $args): Process
+    {
+        $programPath = $this->resolveProgramPath();
+        $process = new Process([$programPath, ...$args], null, $this->environment);
+        $process->setTimeout($this->timeout);
+        $process->setIdleTimeout($this->idleTimeout);
+        $process->start();
+        return $process;
+    }
+
+    protected function resolveProgramPath(): string
+    {
+        $executableFinder = new ExecutableFinder();
+        $path = $executableFinder->find($this->program, $this->defaultPath, $this->additionalProgramDirectories);
+
+        if (is_null($path) || !is_file($path)) {
+            throw new \Exception("Could not locate \"{$this->program}\" program.");
+        }
+
+        return $path;
+    }
+}

scripts/Services/RequirementsValidator.php

@@ -0,0 +1,39 @@
+<?php
+
+namespace Cli\Services;
+
+use Exception;
+
+class RequirementsValidator
+{
+    /**
+     * Ensure the required PHP extensions are installed for this command.
+     * @throws Exception
+     */
+    public static function validate(): void
+    {
+        $errors = [];
+
+        if (version_compare(PHP_VERSION, '8.0.2') < 0) {
+            $errors[] = "PHP >= 8.0.2 is required to install BookStack.";
+        }
+
+        $requiredExtensions = ['bcmath', 'curl', 'gd', 'iconv', 'libxml', 'mbstring', 'mysqlnd', 'xml'];
+        foreach ($requiredExtensions as $extension) {
+            if (!extension_loaded($extension)) {
+                $errors[] = "The \"{$extension}\" PHP extension is required by not active.";
+            }
+        }
+
+        try {
+            (new ProgramRunner('git', '/usr/bin/git'))->ensureFound();
+            (new ProgramRunner('php', '/usr/bin/php'))->ensureFound();
+        } catch (Exception $exception) {
+            $errors[] = $exception->getMessage();
+        }
+
+        if (count($errors) > 0) {
+            throw new Exception("Requirements failed with following errors:\n" . implode("\n", $errors));
+        }
+    }
+}

scripts/compile.php

@@ -0,0 +1,52 @@
+<?php
+
+/**
+ * This file builds a phar archive to contain our CLI code.
+ * Attribution to https://blog.programster.org/creating-phar-files
+ * for the code in this file.
+ */
+
+try {
+    $pharFile = 'app.phar';
+
+    // clean up
+    if (file_exists($pharFile)) {
+        unlink($pharFile);
+    }
+
+    if (file_exists($pharFile . '.gz')) {
+        unlink($pharFile . '.gz');
+    }
+
+    // create phar
+    $phar = new Phar($pharFile);
+
+    // start buffering. Mandatory to modify stub to add shebang
+    $phar->startBuffering();
+
+    // Create the default stub from main.php entrypoint
+    $defaultStub = $phar->createDefaultStub('run');
+
+    // Add the rest of the apps files
+    $phar->addFile(__DIR__ . '/run', 'run');
+    $phar->buildFromDirectory(__DIR__, '/vendor(.*)/');
+    $phar->buildFromDirectory(__DIR__, '/Commands(.*)/');
+
+    // Customize the stub to add the shebang
+    $stub = "#!/usr/bin/env php \n" . $defaultStub;
+
+    // Add the stub
+    $phar->setStub($stub);
+
+    $phar->stopBuffering();
+
+    // plus - compressing it into gzip
+    $phar->compressFiles(Phar::GZ);
+
+    # Make the file executable
+    chmod(__DIR__ . "/{$pharFile}", 0770);
+
+    echo "$pharFile successfully created" . PHP_EOL;
+} catch (Exception $e) {
+    echo $e->getMessage();
+}

scripts/composer.json

@@ -0,0 +1,21 @@
+{
+    "require": {
+        "symfony/console": "^6.0",
+        "symfony/process": "^6.0",
+        "vlucas/phpdotenv": "^5.5"
+    },
+    "autoload": {
+        "psr-4": {
+            "Cli\\Commands\\": "Commands/",
+            "Cli\\Services\\": "Services/"
+        }
+    },
+    "config": {
+        "optimize-autoloader": true,
+        "preferred-install": "dist",
+        "sort-packages": true,
+        "platform": {
+            "php": "8.0.2"
+        }
+    }
+}

scripts/run

@@ -0,0 +1,35 @@
+#!/usr/bin/env php
+<?php
+
+if (php_sapi_name() !== 'cli') {
+    exit;
+}
+
+require __DIR__ . '/vendor/autoload.php';
+
+use Cli\Commands\BackupCommand;
+use Cli\Commands\InitCommand;
+use Cli\Commands\RestoreCommand;
+use Cli\Commands\UpdateCommand;
+use Symfony\Component\Console\Application;
+use Symfony\Component\Console\Formatter\OutputFormatterStyle;
+use Symfony\Component\Console\Output\ConsoleOutput;
+
+// Setup our CLI
+$app = new Application('bookstack-system');
+$app->setCatchExceptions(false);
+
+$app->add(new BackupCommand());
+$app->add(new UpdateCommand());
+$app->add(new InitCommand());
+$app->add(new RestoreCommand());
+
+try {
+    $app->run();
+} catch (Exception $error) {
+    $output = (new ConsoleOutput())->getErrorOutput();
+    $output->getFormatter()->setStyle('error', new OutputFormatterStyle('red'));
+    $output->writeln("<error>\nAn error occurred when attempting to run a command:\n</error>");
+    $output->writeln($error->getMessage());
+    exit(1);
+}